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Subject: Bug#477041: matwrap: FTBFS: string.h:100: error: declaration of 'int strcmp(const char*, const char*) throw ()' throws different exceptions
Reply-To: Lucas Nussbaum <lucas@lucas-nussbaum.net>, 477041@bugs.debian.org
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Date: Sun, 20 Apr 2008 18:03:10 +0200
From: Lucas Nussbaum <lucas@lucas-nussbaum.net>
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Package: matwrap
Version: 0.57-10
Severity: serious
User: debian-qa@lists.debian.org
Usertags: qa-ftbfs-20080419 qa-ftbfs
Justification: FTBFS on i386

Hi,

During a rebuild of all packages in sid, your package failed to build on i386.

This rebuild was done with gcc 4.3 instead of gcc 4.2, because gcc 4.3 is now
the default on most architectures (even if it's not the case on i386 yet).
Feel free to downgrade this bug to 'important' if your package is only built
on i386, and this bug is specific to gcc 4.3 (i.e the package builds fine with
gcc 4.2).

Relevant part:
> DC-Build-Header: matwrap 0.57-10 / Sat Apr 19 21:48:58 +0200 2008
> Automatic build of matwrap_0.57-10 on gdx-74.orsay.grid5000.fr by sbuild/amd64 0.57.0
> Build started at 20080419-2148
> ******************************************************************************
> Failed to open ./matwrap_0.57-10.dsc
> Checking available source versions...
> Fetching source files...
> Reading package lists...
> Building dependency tree...
> Reading state information...
> Need to get 94.9kB of source archives.
> Get:1 http://idpot.grenoble.grid5000.fr sid/main matwrap 0.57-10 (dsc) [1285B]
> Get:2 http://idpot.grenoble.grid5000.fr sid/main matwrap 0.57-10 (tar) [88.3kB]
> Get:3 http://idpot.grenoble.grid5000.fr sid/main matwrap 0.57-10 (diff) [5320B]
> Fetched 94.9kB in 0s (435kB/s)
> Download complete and in download only mode
> ** Using build dependencies supplied by package:
> Build-Depends: debhelper (>= 4.0.0), cdbs, quilt
> Build-Depends-Indep: octave2.1-headers (>= 1:2.1.73-14) | octave3.0-headers
> Checking for already installed source dependencies...
> debhelper: missing
> Using default version 6.0.11
> cdbs: missing
> quilt: missing
> octave2.1-headers: missing
> Using default version 1:2.1.73-19
> octave3.0-headers: missing
> Checking for source dependency conflicts...
> Reading package lists...
> Building dependency tree...
> Reading state information...
> The following extra packages will be installed:
>   bsdmainutils diffstat file gettext gettext-base gfortran gfortran-4.3
>   groff-base html2text intltool-debian libblas-dev libblas3gf libfftw3-3
>   libfftw3-dev libgfortran3 libhdf5-serial-1.6.6-0 libhdf5-serial-dev
>   libjpeg62 libjpeg62-dev liblapack-dev liblapack3gf libmagic1 libncurses5-dev
>   libreadline5-dev man-db octave2.1 po-debconf texinfo zlib1g-dev
> Suggested packages:
>   wamerican wordlist whois vacation devscripts doc-base dh-make cvs
>   gettext-doc gfortran-doc gfortran-multilib gfortran-4.3-doc
>   gfortran-4.3-multilib libgfortran3-dbg groff libhdf5-doc www-browser
>   octave2.1-doc octave2.1-emacsen octave2.1-htmldoc octave2.1-info procmail
>   graphviz texinfo-doc-nonfree texlive-base texlive-generic-recommended
>   texlive-latex-base
> Recommended packages:
>   autotools-dev curl wget lynx gnuplot libatlas3gf-base libcompress-zlib-perl
>   libmail-box-perl libmail-sendmail-perl
> The following NEW packages will be installed:
>   bsdmainutils cdbs debhelper diffstat file gettext gettext-base gfortran
>   gfortran-4.3 groff-base html2text intltool-debian libblas-dev libblas3gf
>   libfftw3-3 libfftw3-dev libgfortran3 libhdf5-serial-1.6.6-0
>   libhdf5-serial-dev libjpeg62 libjpeg62-dev liblapack-dev liblapack3gf
>   libmagic1 libncurses5-dev libreadline5-dev man-db octave2.1
>   octave2.1-headers po-debconf quilt texinfo zlib1g-dev
> 0 upgraded, 33 newly installed, 0 to remove and 0 not upgraded.
> Need to get 30.2MB of archives.
> After this operation, 92.2MB of additional disk space will be used.
> WARNING: The following packages cannot be authenticated!
>   bsdmainutils groff-base man-db libmagic1 file gettext-base texinfo html2text
>   gettext intltool-debian po-debconf debhelper cdbs diffstat libgfortran3
>   gfortran-4.3 gfortran libblas3gf libblas-dev libfftw3-3 libfftw3-dev
>   libhdf5-serial-1.6.6-0 libjpeg62 libjpeg62-dev zlib1g-dev libhdf5-serial-dev
>   liblapack3gf liblapack-dev libncurses5-dev libreadline5-dev octave2.1
>   octave2.1-headers quilt
> Authentication warning overridden.
> Get:1 http://idpot.grenoble.grid5000.fr sid/main bsdmainutils 6.1.10 [172kB]
> Get:2 http://idpot.grenoble.grid5000.fr sid/main groff-base 1.18.1.1-20 [846kB]
> Get:3 http://idpot.grenoble.grid5000.fr sid/main man-db 2.5.1-3 [997kB]
> Get:4 http://idpot.grenoble.grid5000.fr sid/main libmagic1 4.23-2 [342kB]
> Get:5 http://idpot.grenoble.grid5000.fr sid/main file 4.23-2 [41.0kB]
> Get:6 http://idpot.grenoble.grid5000.fr sid/main gettext-base 0.17-2 [123kB]
> Get:7 http://idpot.grenoble.grid5000.fr sid/main texinfo 4.11.dfsg.1-4 [710kB]
> Get:8 http://idpot.grenoble.grid5000.fr sid/main html2text 1.3.2a-3 [98.9kB]
> Get:9 http://idpot.grenoble.grid5000.fr sid/main gettext 0.17-2 [2683kB]
> Get:10 http://idpot.grenoble.grid5000.fr sid/main intltool-debian 0.35.0+20060710.1 [30.8kB]
> Get:11 http://idpot.grenoble.grid5000.fr sid/main po-debconf 1.0.12.1 [237kB]
> Get:12 http://idpot.grenoble.grid5000.fr sid/main debhelper 6.0.11 [522kB]
> Get:13 http://idpot.grenoble.grid5000.fr sid/main cdbs 0.4.52 [921kB]
> Get:14 http://idpot.grenoble.grid5000.fr sid/main diffstat 1.45-2 [21.1kB]
> Get:15 http://idpot.grenoble.grid5000.fr sid/main libgfortran3 4.3.0-3 [221kB]
> Get:16 http://idpot.grenoble.grid5000.fr sid/main gfortran-4.3 4.3.0-3 [3480kB]
> Get:17 http://idpot.grenoble.grid5000.fr sid/main gfortran 4:4.3.0-4 [1198B]
> Get:18 http://idpot.grenoble.grid5000.fr sid/main libblas3gf 1.2-1.5 [310kB]
> Get:19 http://idpot.grenoble.grid5000.fr sid/main libblas-dev 1.2-1.5 [312kB]
> Get:20 http://idpot.grenoble.grid5000.fr sid/main libfftw3-3 3.1.2-3 [1076kB]
> Get:21 http://idpot.grenoble.grid5000.fr sid/main libfftw3-dev 3.1.2-3 [1489kB]
> Get:22 http://idpot.grenoble.grid5000.fr sid/main libhdf5-serial-1.6.6-0 1.6.6-4 [629kB]
> Get:23 http://idpot.grenoble.grid5000.fr sid/main libjpeg62 6b-14 [86.0kB]
> Get:24 http://idpot.grenoble.grid5000.fr sid/main libjpeg62-dev 6b-14 [186kB]
> Get:25 http://idpot.grenoble.grid5000.fr sid/main zlib1g-dev 1:1.2.3.3.dfsg-12 [157kB]
> Get:26 http://idpot.grenoble.grid5000.fr sid/main libhdf5-serial-dev 1.6.6-4 [750kB]
> Get:27 http://idpot.grenoble.grid5000.fr sid/main liblapack3gf 3.1.1-0.4 [2887kB]
> Get:28 http://idpot.grenoble.grid5000.fr sid/main liblapack-dev 3.1.1-0.4 [3004kB]
> Get:29 http://idpot.grenoble.grid5000.fr sid/main libncurses5-dev 5.6+20080405-1 [1502kB]
> Get:30 http://idpot.grenoble.grid5000.fr sid/main libreadline5-dev 5.2-3 [220kB]
> Get:31 http://idpot.grenoble.grid5000.fr sid/main octave2.1 1:2.1.73-19 [5560kB]
> Get:32 http://idpot.grenoble.grid5000.fr sid/main octave2.1-headers 1:2.1.73-19 [294kB]
> Get:33 http://idpot.grenoble.grid5000.fr sid/main quilt 0.46-4 [339kB]
> debconf: delaying package configuration, since apt-utils is not installed
> Fetched 30.2MB in 2s (11.6MB/s)
> Selecting previously deselected package bsdmainutils.
> (Reading database ... 9334 files and directories currently installed.)
> Unpacking bsdmainutils (from .../bsdmainutils_6.1.10_i386.deb) ...
> Selecting previously deselected package groff-base.
> Unpacking groff-base (from .../groff-base_1.18.1.1-20_i386.deb) ...
> Selecting previously deselected package man-db.
> Unpacking man-db (from .../man-db_2.5.1-3_i386.deb) ...
> Selecting previously deselected package libmagic1.
> Unpacking libmagic1 (from .../libmagic1_4.23-2_i386.deb) ...
> Selecting previously deselected package file.
> Unpacking file (from .../archives/file_4.23-2_i386.deb) ...
> Selecting previously deselected package gettext-base.
> Unpacking gettext-base (from .../gettext-base_0.17-2_i386.deb) ...
> Selecting previously deselected package texinfo.
> Unpacking texinfo (from .../texinfo_4.11.dfsg.1-4_i386.deb) ...
> Selecting previously deselected package html2text.
> Unpacking html2text (from .../html2text_1.3.2a-3_i386.deb) ...
> Selecting previously deselected package gettext.
> Unpacking gettext (from .../gettext_0.17-2_i386.deb) ...
> Selecting previously deselected package intltool-debian.
> Unpacking intltool-debian (from .../intltool-debian_0.35.0+20060710.1_all.deb) ...
> Selecting previously deselected package po-debconf.
> Unpacking po-debconf (from .../po-debconf_1.0.12.1_all.deb) ...
> Selecting previously deselected package debhelper.
> Unpacking debhelper (from .../debhelper_6.0.11_all.deb) ...
> Selecting previously deselected package cdbs.
> Unpacking cdbs (from .../archives/cdbs_0.4.52_all.deb) ...
> Selecting previously deselected package diffstat.
> Unpacking diffstat (from .../diffstat_1.45-2_i386.deb) ...
> Selecting previously deselected package libgfortran3.
> Unpacking libgfortran3 (from .../libgfortran3_4.3.0-3_i386.deb) ...
> Selecting previously deselected package gfortran-4.3.
> Unpacking gfortran-4.3 (from .../gfortran-4.3_4.3.0-3_i386.deb) ...
> Selecting previously deselected package gfortran.
> Unpacking gfortran (from .../gfortran_4%3a4.3.0-4_i386.deb) ...
> Selecting previously deselected package libblas3gf.
> Unpacking libblas3gf (from .../libblas3gf_1.2-1.5_i386.deb) ...
> Selecting previously deselected package libblas-dev.
> Unpacking libblas-dev (from .../libblas-dev_1.2-1.5_i386.deb) ...
> Selecting previously deselected package libfftw3-3.
> Unpacking libfftw3-3 (from .../libfftw3-3_3.1.2-3_i386.deb) ...
> Selecting previously deselected package libfftw3-dev.
> Unpacking libfftw3-dev (from .../libfftw3-dev_3.1.2-3_i386.deb) ...
> Selecting previously deselected package libhdf5-serial-1.6.6-0.
> Unpacking libhdf5-serial-1.6.6-0 (from .../libhdf5-serial-1.6.6-0_1.6.6-4_i386.deb) ...
> Selecting previously deselected package libjpeg62.
> Unpacking libjpeg62 (from .../libjpeg62_6b-14_i386.deb) ...
> Selecting previously deselected package libjpeg62-dev.
> Unpacking libjpeg62-dev (from .../libjpeg62-dev_6b-14_i386.deb) ...
> Selecting previously deselected package zlib1g-dev.
> Unpacking zlib1g-dev (from .../zlib1g-dev_1%3a1.2.3.3.dfsg-12_i386.deb) ...
> Selecting previously deselected package libhdf5-serial-dev.
> Unpacking libhdf5-serial-dev (from .../libhdf5-serial-dev_1.6.6-4_i386.deb) ...
> Selecting previously deselected package liblapack3gf.
> Unpacking liblapack3gf (from .../liblapack3gf_3.1.1-0.4_i386.deb) ...
> Selecting previously deselected package liblapack-dev.
> Unpacking liblapack-dev (from .../liblapack-dev_3.1.1-0.4_i386.deb) ...
> Selecting previously deselected package libncurses5-dev.
> Unpacking libncurses5-dev (from .../libncurses5-dev_5.6+20080405-1_i386.deb) ...
> Selecting previously deselected package libreadline5-dev.
> Unpacking libreadline5-dev (from .../libreadline5-dev_5.2-3_i386.deb) ...
> Selecting previously deselected package octave2.1.
> Unpacking octave2.1 (from .../octave2.1_1%3a2.1.73-19_i386.deb) ...
> Selecting previously deselected package octave2.1-headers.
> Unpacking octave2.1-headers (from .../octave2.1-headers_1%3a2.1.73-19_i386.deb) ...
> Selecting previously deselected package quilt.
> Unpacking quilt (from .../archives/quilt_0.46-4_all.deb) ...
> Setting up bsdmainutils (6.1.10) ...
> Setting up groff-base (1.18.1.1-20) ...
> Setting up man-db (2.5.1-3) ...
> Building database of manual pages ...
> Setting up libmagic1 (4.23-2) ...
> Setting up file (4.23-2) ...
> Setting up gettext-base (0.17-2) ...
> Setting up texinfo (4.11.dfsg.1-4) ...
> Setting up html2text (1.3.2a-3) ...
> Setting up gettext (0.17-2) ...
> Setting up intltool-debian (0.35.0+20060710.1) ...
> Setting up po-debconf (1.0.12.1) ...
> Setting up debhelper (6.0.11) ...
> Setting up cdbs (0.4.52) ...
> Setting up diffstat (1.45-2) ...
> Setting up libgfortran3 (4.3.0-3) ...
> Setting up gfortran-4.3 (4.3.0-3) ...
> Setting up gfortran (4:4.3.0-4) ...
> Setting up libblas3gf (1.2-1.5) ...
> Setting up libblas-dev (1.2-1.5) ...
> Setting up libfftw3-3 (3.1.2-3) ...
> Setting up libfftw3-dev (3.1.2-3) ...
> Setting up libhdf5-serial-1.6.6-0 (1.6.6-4) ...
> Setting up libjpeg62 (6b-14) ...
> Setting up libjpeg62-dev (6b-14) ...
> Setting up zlib1g-dev (1:1.2.3.3.dfsg-12) ...
> Setting up libhdf5-serial-dev (1.6.6-4) ...
> Setting up liblapack3gf (3.1.1-0.4) ...
> Setting up liblapack-dev (3.1.1-0.4) ...
> Setting up libncurses5-dev (5.6+20080405-1) ...
> Setting up libreadline5-dev (5.2-3) ...
> Setting up octave2.1 (1:2.1.73-19) ...
> Setting up octave2.1-headers (1:2.1.73-19) ...
> Setting up quilt (0.46-4) ...
> Checking correctness of source dependencies...
> Kernel: Linux 2.6.18-3-amd64 i386 (x86_64)
> Toolchain package versions: libc6-dev_2.7-10 linux-libc-dev_2.6.24-5 gcc-4.3_4.3.0-3 g++-4.3_4.3.0-3 binutils_2.18.1~cvs20080103-4 libstdc++6-4.3-dev_4.3.0-3 libstdc++6_4.3.0-3
> ------------------------------------------------------------------------------
> gpg: Signature made Sun Apr 13 17:57:25 2008 CEST using DSA key ID 4A5D72FE
> gpg: Can't check signature: public key not found
> dpkg-source: extracting matwrap in matwrap-0.57
> dpkg-source: info: unpacking matwrap_0.57.orig.tar.gz
> dpkg-source: info: applying matwrap_0.57-10.diff.gz
> dpkg-buildpackage: set CFLAGS to default value: -g -O2
> dpkg-buildpackage: set CPPFLAGS to default value: 
> dpkg-buildpackage: set LDFLAGS to default value: 
> dpkg-buildpackage: set FFLAGS to default value: -g -O2
> dpkg-buildpackage: set CXXFLAGS to default value: -g -O2
> dpkg-buildpackage: source package matwrap
> dpkg-buildpackage: source version 0.57-10
> dpkg-buildpackage: source changed by Thomas Weber <thomas.weber.mail@gmail.com>
> dpkg-buildpackage: host architecture i386
>  /usr/bin/fakeroot debian/rules clean
> test -x debian/rules
> dh_testroot
> ( cd share/matwrap/Examples/simple ;	\
> 	  make clean )
> make[1]: Entering directory `/build/user/matwrap-0.57/share/matwrap/Examples/simple'
> rm -f -rf wrap_m *.o *_matlab.c *_octave.cc *.mexaxp *.oct \
> 	*.mex4 *_stub.m *_matlab.c octave-core so_locations *.ct tela_simple
> make[1]: Leaving directory `/build/user/matwrap-0.57/share/matwrap/Examples/simple'
> dh_clean 
> /usr/bin/make  -C . CFLAGS="-g -O2 -g -Wall -O2" CXXFLAGS="-g -O2 -g -Wall -O2" CPPFLAGS="" LDFLAGS=""  -k clean
> make[1]: Entering directory `/build/user/matwrap-0.57'
> make[1]: *** No rule to make target `clean'.
> make[1]: Leaving directory `/build/user/matwrap-0.57'
> make: [makefile-clean] Error 2 (ignored)
> rm -f debian/stamp-makefile-build
> /usr/bin/make -f debian/rules reverse-config
> make[1]: Entering directory `/build/user/matwrap-0.57'
> make[1]: Nothing to be done for `reverse-config'.
> make[1]: Leaving directory `/build/user/matwrap-0.57'
> if [ -d "." ] ; then \
> 	  cd . && QUILT_PATCHES=patches quilt --quiltrc /dev/null pop -a -R || test $? = 2 ; \
> 	fi 
> No patch removed
> if [ -n "patches" ] ; then \
> 	  if [ -L ./patches ] ; then \
> 	    rm ./patches ; \
> 	  fi ; \
> 	fi
> rm -rf ./.pc
> rm -f debian/stamp-patch*
>  dpkg-source -b matwrap-0.57
> dpkg-source: info: using source format `1.0'
> dpkg-source: info: building matwrap using existing matwrap_0.57.orig.tar.gz
> dpkg-source: info: building matwrap in matwrap_0.57-10.diff.gz
> dpkg-source: info: building matwrap in matwrap_0.57-10.dsc
>  debian/rules build
> test -x debian/rules
> mkdir -p "."
> /usr/bin/make -f debian/rules reverse-config
> make[1]: Entering directory `/build/user/matwrap-0.57'
> make[1]: Nothing to be done for `reverse-config'.
> make[1]: Leaving directory `/build/user/matwrap-0.57'
> if [ -n "patches" ] ; then \
> 	  if [ -L ./patches ] ; then : ; else \
> 	    (cd .; ln -s /build/user/matwrap-0.57/debian/patches patches) ; \
> 	  fi ; \
> 	fi
> cd . && QUILT_PATCHES=patches quilt --quiltrc /dev/null push -a || test $? = 2
> Applying patch namespace-std-for-string.diff
> patching file share/matwrap/wrap_octave.pl
> 
> Applying patch strip-file-extension.diff
> patching file share/matwrap/wrap_octave.pl
> 
> Applying patch install.pl-get-manpage.diff
> patching file install.pl
> 
> Applying patch library-path-gcc-4.diff
> patching file bin/matwrap
> 
> Applying patch makefile-build-target.diff
> patching file Makefile
> 
> Applying patch use_iostream_for_iostream.h
> patching file share/matwrap/Examples/simple/simple.h
> patching file share/matwrap/Examples/single_axon/hodgkin_huxley.cxx
> patching file share/matwrap/Examples/single_axon/single_axon.cxx
> 
> Now at patch use_iostream_for_iostream.h
> touch debian/stamp-patched
> /usr/bin/make -f debian/rules update-config
> make[1]: Entering directory `/build/user/matwrap-0.57'
> make[1]: Nothing to be done for `update-config'.
> make[1]: Leaving directory `/build/user/matwrap-0.57'
> /usr/bin/make  -C . CFLAGS="-g -O2 -g -Wall -O2" CXXFLAGS="-g -O2 -g -Wall -O2" CPPFLAGS="" LDFLAGS=""  
> make[1]: Entering directory `/build/user/matwrap-0.57'
> make[1]: Nothing to be done for `all'.
> make[1]: Leaving directory `/build/user/matwrap-0.57'
> touch debian/stamp-makefile-build
> DEB_MAKE_CHECK_TARGET unset, not running checks
> # Run checks
> ( cd share/matwrap/Examples/simple ;		\
> 	  make PERL="perl -I../.." octave ;		\
> 	  echo "simple_stub; demo" | octave -qf )
> make[1]: Entering directory `/build/user/matwrap-0.57/share/matwrap/Examples/simple'
> perl -I../.. -w ../../../../bin/matwrap -language octave simple.h \
> 		-o simple_octave.cc -stub simple_stub.m
> mkoctfile simple_octave.cc
> In file included from /usr/include/H5FDgass.h:28,
>                  from /usr/include/hdf5.h:47,
>                  from /usr/include/octave-2.1.73/octave/ov.h:38,
>                  from /usr/include/octave-2.1.73/octave/oct-obj.h:37,
>                  from /usr/include/octave-2.1.73/octave/ov-fcn.h:37,
>                  from /usr/include/octave-2.1.73/octave/ov-builtin.h:33,
>                  from /usr/include/octave-2.1.73/octave/defun-int.h:29,
>                  from /usr/include/octave-2.1.73/octave/defun-dld.h:31,
>                  from /usr/include/octave-2.1.73/octave/oct.h:36,
>                  from simple_octave.cc:10:
> /usr/include/string.h:100: error: declaration of 'int strcmp(const char*, const char*) throw ()' throws different exceptions
> simple.h:94: error: from previous declaration 'int strcmp(const char*, const char*)'
> make[1]: *** [simple_octave.oct] Error 1

The full build log is available from:
   http://people.debian.org/~lucas/logs/2008/04/19

A list of current common problems and possible solutions is available at 
http://wiki.debian.org/qa.debian.org/FTBFS . You're welcome to contribute!

About the archive rebuild: The rebuild was done on about 50 AMD64 nodes
of the Grid'5000 platform, using a clean chroot containing a sid i386
environment.  Internet was not accessible from the build systems.

-- 
| Lucas Nussbaum
| lucas@lucas-nussbaum.net   http://www.lucas-nussbaum.net/ |
| jabber: lucas@nussbaum.fr             GPG: 1024D/023B3F4F |



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